PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007273P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SBP
Protein Properties Length: 108aa    MW: 11739.8 Da    PI: 5.1624
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007273P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.49.7e-2456103148
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                     +Cq++gC+adl+ a+ yhrrhkvCe+h+ka+vv+++gleqrfCqqCs 
  MELO3C007273P1  56 RCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSS 103
                     6*********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-2549102IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.51254107IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-2355104IPR004333Transcription factor, SBP-box
PfamPF031107.5E-1957103IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MANSNDHSWE DMILDDDDDD DNDTEEVGFV DNERRRRSGL TTGRGGGGGG RSTVARCQAD  60
GCNADLTGAR PYHRRHKVCE FHAKAAVVIL AGLEQRFCQQ CSSIGIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-1947104158squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-172LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-172LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439842.12e-70PREDICTED: squamosa promoter-binding protein 1
SwissprotQ387411e-22SBP1_ANTMA; Squamosa promoter-binding protein 1
SwissprotQ8GXL33e-21SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A0A0KK741e-48A0A0A0KK74_CUCSA; Uncharacterized protein
STRINGVIT_10s0003g00050.t016e-23(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.23e-23squamosa promoter binding protein-like 8